3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11870

Details:

PFam ID : PF11870

PFam Domain Description : Domain of unknown function (DUF3390)

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 241

Average sequence length: 89.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11870	C3IGL6_BACTU_3_54	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11870	E4M6P6_9FIRM_434_554	100

Sequence based PCA Plot of the family - PF11870 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay