3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11861

Details:

PFam ID : PF11861

PFam Domain Description : Domain of unknown function (DUF3381)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 159

Average sequence length: 161.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11861	E4X0R1_OIKDI_3_104	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11861	E9CAJ3_9EUKA_230_442	100

Sequence based PCA Plot of the family - PF11861 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay