3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11858

Details:

PFam ID : PF11858

PFam Domain Description : Domain of unknown function (DUF3378)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 137

Average sequence length: 77.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11858	B9J058_BACCQ_1_49	21.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11858	D2MQ83_9FIRM_1_74	100

Sequence based PCA Plot of the family - PF11858 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay