3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11852

Details:

PFam ID : PF11852

PFam Domain Description : Domain of unknown function (DUF3372)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 129

Average sequence length: 158.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11852	A8J6Y4_CHLRE_756_867	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11852	Q487M0_COLP3_815_996	100

Sequence based PCA Plot of the family - PF11852 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=82 Length=8
Motif4 Start=124 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay