3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11851

Details:

PFam ID : PF11851

PFam Domain Description : Domain of unknown function (DUF3371)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 39

Average sequence length: 127.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11851	F1Q885_DANRE_381_497	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11851	E7FEM8_DANRE_329_489	100

Sequence based PCA Plot of the family - PF11851 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay