3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11849

Details:

PFam ID : PF11849

PFam Domain Description : Domain of unknown function (DUF3369)

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 160

Average sequence length: 169.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11849	C9QFG8_VIBOR_145_310	96

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11849	D3P1M1_AZOS1_157_337	100

Sequence based PCA Plot of the family - PF11849 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=8
Motif2 Start=136 Length=19
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay