3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11848

Details:

PFam ID : PF11848

PFam Domain Description : Domain of unknown function (DUF3368)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 159

Average sequence length: 47.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11848	B7R1D3_9EURY_108_153	17.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11848	B5W6H2_SPIMA_112_161	99.3

Sequence based PCA Plot of the family - PF11848 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay