3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11846

Details:

PFam ID : PF11846

PFam Domain Description : Domain of unknown function (DUF3366)

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 147

Average sequence length: 191.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11846	A4SKY3_AERS4_362_564	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11846	A4SKY3_AERS4_362_564	100

Sequence based PCA Plot of the family - PF11846 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=17 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay