3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11842

Details:

PFam ID : PF11842

PFam Domain Description : Domain of unknown function (DUF3362)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 350

Average sequence length: 132.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11842	A7SLG8_NEMVE_111_267	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11842	C3JBZ1_9PORP_532_648	99.7

Sequence based PCA Plot of the family - PF11842 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=61 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay