3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11838

Details:

PFam ID : PF11838

PFam Domain Description : Domain of unknown function (DUF3358)

Number of Sequence in 50% Dataset : 464

Number of Sequence in Full Dataset : 1293

Average sequence length: 285.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11838	F1KQL5_ASCSU_583_932	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11838	A7AEB0_9PORP_542_847	99.2

Sequence based PCA Plot of the family - PF11838 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=17
Motif2 Start=64 Length=8
Motif3 Start=239 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay