3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11837

Details:

PFam ID : PF11837

PFam Domain Description : Domain of unknown function (DUF3357)

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 78

Average sequence length: 101.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11837	C7DY48_VIGRA_1_42	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11837	Q8VXS7_BETVU_6_141	100

Sequence based PCA Plot of the family - PF11837 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay