3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11834

Details:

PFam ID : PF11834

PFam Domain Description : Domain of unknown function (DUF3354)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 117

Average sequence length: 68.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11834	B7PI02_IXOSC_1_60	36.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11834	D6X242_TRICA_3_74	100

Sequence based PCA Plot of the family - PF11834 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=11
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay