3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11831

Details:

PFam ID : PF11831

PFam Domain Description : pre-mRNA splicing factor component

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 135

Average sequence length: 330.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11831	A5AP80_VITVI_245_482	91.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11831	C4Q0P4_SCHMA_347_802	100

Sequence based PCA Plot of the family - PF11831 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=103 Length=8
Motif3 Start=333 Length=8
Motif4 Start=160 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay