3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11830

Details:

PFam ID : PF11830

PFam Domain Description : Domain of unknown function (DUF3350)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 28

Average sequence length: 53.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11830	B2J6L6_NOSP7_1_73	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11830	C3XWK3_BRAFL_1_32	100

Sequence based PCA Plot of the family - PF11830 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay