3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11822

Details:

PFam ID : PF11822

PFam Domain Description : Domain of unknown function (DUF3342)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 41

Average sequence length: 258.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11822	C6LS43_GIAIB_76_370	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11822	F0YN17_9STRA_20_337	100

Sequence based PCA Plot of the family - PF11822 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=24 Length=8
Motif4 Start=49 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay