3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11818

Details:

PFam ID : PF11818

PFam Domain Description : C-terminal domain of tail specific protease (DUF3340)

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 280

Average sequence length: 144.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11818	A6DF34_9BACT_557_707	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11818	Q1YTL7_9GAMM_529_735	100

Sequence based PCA Plot of the family - PF11818 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=17
Motif2 Start=72 Length=8
Motif3 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay