3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11817

Details:

PFam ID : PF11817

PFam Domain Description : Foie gras liver health family 1

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 173

Average sequence length: 210.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11817	A8PSZ7_MALGO_295_398	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11817	C1G2F6_PARBD_304_567	98.8

Sequence based PCA Plot of the family - PF11817 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=256 Length=8
Motif3 Start=224 Length=8
Motif4 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay