3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11816

Details:

PFam ID : PF11816

PFam Domain Description : Domain of unknown function (DUF3337)

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 126

Average sequence length: 288.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11816	A0AUQ2_DANRE_365_521	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11816	D2VI77_NAEGR_347_712	100

Sequence based PCA Plot of the family - PF11816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=220 Length=8
Motif3 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay