3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11812

Details:

PFam ID : PF11812

PFam Domain Description : Domain of unknown function (DUF3333)

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 175

Average sequence length: 138.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11812	B3EFI8_CHLL2_7_88	70.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11812	Q11DN4_MESSB_22_190	100

Sequence based PCA Plot of the family - PF11812 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=152 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay