3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11810

Details:

PFam ID : PF11810

PFam Domain Description : Domain of unknown function (DUF3332)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 78

Average sequence length: 169.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11810	A6DU88_9BACT_1_150	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11810	Q8F6U9_LEPIN_7_199	100

Sequence based PCA Plot of the family - PF11810 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay