3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11809

Details:

PFam ID : PF11809

PFam Domain Description : Domain of unknown function (DUF3330)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 27

Average sequence length: 59.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11809	B8GTV3_THISH_3_55	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11809	D9SI18_GALCS_1_55	100

Sequence based PCA Plot of the family - PF11809 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay