3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11801

Details:

PFam ID : PF11801

PFam Domain Description : Tom37 C-terminal domain

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 120

Average sequence length: 119.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11801	A5DUS1_LODEL_96_311	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11801	F0XU37_9PEZI_98_300	100

Sequence based PCA Plot of the family - PF11801 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay