3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11799

Details:

PFam ID : PF11799

PFam Domain Description : impB/mucB/samB family C-terminal

Number of Sequence in 50% Dataset : 509

Number of Sequence in Full Dataset : 2621

Average sequence length: 129.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11799	Q5Q9G7_HUMAN_381_455	70.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11799	E1NMB7_9LACO_224_293	99.6

Sequence based PCA Plot of the family - PF11799 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=75 Length=11
Motif3 Start=18 Length=8
Motif4 Start=33 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay