3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11798

Details:

PFam ID : PF11798

PFam Domain Description : IMS family HHH motif

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 1026

Average sequence length: 31.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11798	E4TG54_CALNY_161_192	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11798	A7I053_CAMHC_86_117	91.9

Sequence based PCA Plot of the family - PF11798 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=10 Length=24

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay