3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11795

Details:

PFam ID : PF11795

PFam Domain Description : Uncharacterized protein conserved in bacteria N-term (DUF3322)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 85

Average sequence length: 174.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11795	A1A1N9_BIFAA_1_77	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11795	C8WJ54_EGGLE_18_216	92.8

Sequence based PCA Plot of the family - PF11795 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay