3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11794

Details:

PFam ID : PF11794

PFam Domain Description : 4-hydroxyphenylacetate 3-hydroxylase N terminal

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 248

Average sequence length: 251.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11794	C7DBY5_9RHOB_14_284	86.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11794	C7DBY5_9RHOB_14_284	100

Sequence based PCA Plot of the family - PF11794 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=15 Length=8
Motif3 Start=178 Length=8
Motif4 Start=259 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay