3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11793

Details:

PFam ID : PF11793

PFam Domain Description : FANCL C-terminal domain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 91

Average sequence length: 66.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11793	A8JBS2_CHLRE_335_431	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11793	A8JBS2_CHLRE_335_431	100

Sequence based PCA Plot of the family - PF11793 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=61 Length=8
Motif3 Start=84 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay