3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11792

Details:

PFam ID : PF11792

PFam Domain Description : Baculoviridae late expression factor 5 C-terminal domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 41

Average sequence length: 41.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11792	Q9QAB2_9CBAC_181_226	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11792	Q9QAB2_9CBAC_181_226	95

Sequence based PCA Plot of the family - PF11792 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=16 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay