3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11791

Details:

PFam ID : PF11791

PFam Domain Description : Aconitate B N-terminal domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 305

Average sequence length: 150.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11791	C0AWC1_9ENTR_4_38	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11791	A0Y8E6_9GAMM_1_155	100

Sequence based PCA Plot of the family - PF11791 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=48 Length=19
Motif2 Start=12 Length=8
Motif3 Start=147 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay