3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11790

Details:

PFam ID : PF11790

PFam Domain Description : Glycosyl hydrolase catalytic core

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 226

Average sequence length: 212.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11790	C6XSH3_PEDHD_148_320	99.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11790	A7UWJ6_NEUCR_1247_1528	100

Sequence based PCA Plot of the family - PF11790 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=74 Length=8
Motif2 Start=111 Length=8
Motif3 Start=147 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay