3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11789

Details:

PFam ID : PF11789

PFam Domain Description : Zinc-finger of the MIZ type in Nse subunit

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 177

Average sequence length: 59.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11789	E4XBI1_OIKDI_20_82	98

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11789	A9SLU8_PHYPA_138_210	100

Sequence based PCA Plot of the family - PF11789 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=38

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay