3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11788

Details:

PFam ID : PF11788

PFam Domain Description : 39S mitochondrial ribosomal protein L46

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 117

Average sequence length: 109.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11788	E6R1U5_CRYGW_30_146	31.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11788	A8WJK2_CAEBR_251_317	99.1

Sequence based PCA Plot of the family - PF11788 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay