3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11787

Details:

PFam ID : PF11787

PFam Domain Description : Aft1 HRR domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 31

Average sequence length: 75.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11787	ATF1_SCHPO_148_235	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11787	A7EHX1_SCLS1_181_251	93.3

Sequence based PCA Plot of the family - PF11787 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=4 Length=17
Motif3 Start=59 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay