3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11786

Details:

PFam ID : PF11786

PFam Domain Description : Aft1 HRA domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 27

Average sequence length: 77.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11786	ATF1_SCHPO_148_235	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11786	ATF1_SCHPO_148_235	92.3

Sequence based PCA Plot of the family - PF11786 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay