3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11783

Details:

PFam ID : PF11783

PFam Domain Description : Cytochrome c bacterial

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 89

Average sequence length: 169.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11783	B9LZS2_GEOSF_325_557	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11783	A7H9J3_ANADF_345_554	100

Sequence based PCA Plot of the family - PF11783 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=185 Length=8
Motif2 Start=102 Length=8
Motif3 Start=3 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay