3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11776

Details:

PFam ID : PF11776

PFam Domain Description : Domain of unknown function (DUF3315)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 177

Average sequence length: 49.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11776	A1B7M0_PARDP_35_85	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11776	F1Z8M3_9SPHN_153_204	100

Sequence based PCA Plot of the family - PF11776 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=21 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay