3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11775

Details:

PFam ID : PF11775

PFam Domain Description : Cobalamin biosynthesis protein CobT VWA domain

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 154

Average sequence length: 178.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11775	D1U2C2_YERPE_1_75	60.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11775	D4LHB1_9FIRM_518_657	100

Sequence based PCA Plot of the family - PF11775 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=1 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay