3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11774

Details:

PFam ID : PF11774

PFam Domain Description : Lsr2

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 249

Average sequence length: 101.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11774	B5GXV3_STRCL_146_235	21.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11774	D0L4E3_GORB4_3_122	100

Sequence based PCA Plot of the family - PF11774 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=3 Length=8
Motif3 Start=63 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay