3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11772

Details:

PFam ID : PF11772

PFam Domain Description : DNA-directed RNA polymerase subunit beta

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 78

Average sequence length: 46.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11772	D1YGT0_9LACO_1_37	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11772	E4KP73_9LACT_23_67	97.4

Sequence based PCA Plot of the family - PF11772 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay