3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11766

Details:

PFam ID : PF11766

PFam Domain Description : Cell-wall agglutinin N-terminal ligand-sugar binding

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 53

Average sequence length: 233.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11766	Q6FTA2_CANGA_49_301	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11766	C5DFQ3_LACTC_129_397	100

Sequence based PCA Plot of the family - PF11766 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=238 Length=8
Motif3 Start=84 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay