3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11765

Details:

PFam ID : PF11765

PFam Domain Description : Hyphally regulated cell wall protein N-terminal

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 72

Average sequence length: 313.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11765	A5DXP9_LODEL_14_333	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11765	C5MED3_CANTT_7_339	100

Sequence based PCA Plot of the family - PF11765 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=270 Length=8
Motif2 Start=111 Length=8
Motif3 Start=230 Length=8
Motif4 Start=164 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay