3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11764

Details:

PFam ID : PF11764

PFam Domain Description : COMPASS (Complex proteins associated with Set1p) component N

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 88

Average sequence length: 151.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11764	B3MTL2_DROAN_1_87	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11764	C5DCR8_LACTC_659_834	100

Sequence based PCA Plot of the family - PF11764 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=98 Length=8
Motif3 Start=19 Length=8
Motif4 Start=148 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay