3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11762

Details:

PFam ID : PF11762

PFam Domain Description : L-arabinose isomerase C-terminal domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 190

Average sequence length: 114.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11762	B8I9D5_CLOCE_353_465	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11762	F2NAF4_9ACTN_364_477	100

Sequence based PCA Plot of the family - PF11762 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=56 Length=11
Motif3 Start=5 Length=17
Motif4 Start=79 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay