3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11760

Details:

PFam ID : PF11760

PFam Domain Description : Cobalamin synthesis G N-terminal

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 422

Average sequence length: 83.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11760	A6FEA9_9GAMM_9_120	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11760	Q7TU33_PROMP_49_132	100

Sequence based PCA Plot of the family - PF11760 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=76 Length=8
Motif2 Start=19 Length=8
Motif3 Start=39 Length=8
Motif4 Start=53 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay