3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11759

Details:

PFam ID : PF11759

PFam Domain Description : Keratin-associated matrix

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 58

Average sequence length: 52.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11759	A6FEA9_9GAMM_9_120	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11759	D3ZK90_RAT_18_42	52.6

Sequence based PCA Plot of the family - PF11759 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay