3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11756

Details:

PFam ID : PF11756

PFam Domain Description : Nitrous oxide-stimulated promoter

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 209

Average sequence length: 107.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11756	A6FEA9_9GAMM_9_120	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11756	A6FEA9_9GAMM_9_120	100

Sequence based PCA Plot of the family - PF11756 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=77 Length=8
Motif3 Start=15 Length=11
Motif4 Start=54 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay