3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11754

Details:

PFam ID : PF11754

PFam Domain Description : Velvet factor

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 196

Average sequence length: 191.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11754	A2QJ48_ASPNG_41_120	73.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11754	B6QI51_PENMQ_183_429	100

Sequence based PCA Plot of the family - PF11754 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=405 Length=8
Motif4 Start=394 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay