3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11744

Details:

PFam ID : PF11744

PFam Domain Description : Aluminium activated malate transporter

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 157

Average sequence length: 317.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11744	C5LL42_9ALVE_345_591	22.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11744	D3B507_POLPA_522_771	99.3

Sequence based PCA Plot of the family - PF11744 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=118 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay