3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11741

Details:

PFam ID : PF11741

PFam Domain Description : AMIN domain

Number of Sequence in 50% Dataset : 289

Number of Sequence in Full Dataset : 913

Average sequence length: 97.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11741	A6GP75_9BURK_24_145	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11741	Q311F6_DESDG_51_143	96.9

Sequence based PCA Plot of the family - PF11741 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=117 Length=8
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay