3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11739

Details:

PFam ID : PF11739

PFam Domain Description : Dicarboxylate transport

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 175

Average sequence length: 194.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11739	Q1N788_9SPHN_98_209	42.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11739	D1N907_9BACT_584_809	100

Sequence based PCA Plot of the family - PF11739 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=198 Length=8
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay